Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10196652	1.00[JPT][hapmap]
rs10200047	1.00[CHD][hapmap]
rs10497966	1.00[CHD][hapmap]
rs10497975	1.00[CHD][hapmap]
rs11677213	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11688231	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12151481	1.00[CHD][hapmap]
rs13008281	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1505367	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1505371	1.00[CHD][hapmap]
rs16848108	1.00[CHD][hapmap]
rs17346615	1.00[CHD][hapmap]
rs17418292	1.00[CHD][hapmap]
rs17432343	1.00[ASW][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2135155	0.85[EUR][1000 genomes]
rs34990972	0.81[EUR][1000 genomes]
rs35966747	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35993802	0.85[EUR][1000 genomes]
rs62186274	0.87[EUR][1000 genomes]
rs6757140	1.00[CHD][hapmap]
rs7570330	0.85[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7609296	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1014680	chr2:213142147-213301614	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1004573	chr2:213186537-213365252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv875811	chr2:213200920-213347104	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1394791	PECR	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213294600-213298600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:213296800-213298800	Weak transcription	Fetal Heart	heart

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