Variant report

Variant	rs11677222
Chromosome Location	chr2:10532540-10532541
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10531124..10533976-chr2:10546440..10548143,2	MCF-7	breast:
2	chr2:10531886..10534694-chr2:10548127..10550273,2	K562	blood:
3	chr2:10520062..10522966-chr2:10532348..10534201,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10179156	1.00[AMR][1000 genomes]
rs10201917	1.00[AMR][1000 genomes]
rs16856312	1.00[AMR][1000 genomes]
rs73161288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv873642	chr2:10491985-10532869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10518000-10534800	Enhancers	Stomach Mucosa	stomach
2	chr2:10523000-10541000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:10523200-10533000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:10523200-10534200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:10523400-10532600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:10523400-10534000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:10523400-10534200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:10523400-10537800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:10523600-10539000	Weak transcription	Thymus	Thymus
10	chr2:10524800-10536200	Weak transcription	Primary T cells from cord blood	blood
11	chr2:10525600-10532800	Weak transcription	Primary B cells from cord blood	blood
12	chr2:10526600-10533400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:10526800-10532800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:10526800-10532800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:10526800-10537400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:10527000-10532800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:10527200-10532800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr2:10527200-10542400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:10527600-10532800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:10527600-10536200	Weak transcription	Fetal Stomach	stomach
21	chr2:10529000-10533400	Enhancers	Liver	Liver
22	chr2:10530000-10540800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:10530200-10533000	Weak transcription	Brain Germinal Matrix	brain
24	chr2:10530200-10533400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:10530200-10536000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr2:10530400-10532600	Weak transcription	Small Intestine	intestine
27	chr2:10530400-10532800	Weak transcription	Fetal Lung	lung
28	chr2:10530400-10532800	Weak transcription	Gastric	stomach
29	chr2:10530400-10532800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr2:10530400-10533000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:10530400-10533400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:10530400-10533400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr2:10530400-10537600	Weak transcription	Psoas Muscle	Psoas
34	chr2:10530400-10538800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr2:10530400-10540800	Weak transcription	Colon Smooth Muscle	Colon
36	chr2:10530600-10532800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr2:10530600-10532800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr2:10530600-10539800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:10530600-10544400	Weak transcription	Brain Angular Gyrus	brain
40	chr2:10531000-10533600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:10531000-10534400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr2:10531000-10536000	Weak transcription	GM12878-XiMat	blood
43	chr2:10531000-10539800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:10531000-10540600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr2:10531000-10542400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr2:10531000-10544600	Weak transcription	NHLF	lung
47	chr2:10531200-10532800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr2:10531200-10533000	Weak transcription	Right Atrium	heart
49	chr2:10531200-10533200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr2:10531200-10533200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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