Variant report

Variant	rs73161288
Chromosome Location	chr2:10487842-10487843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10478661..10480312-chr2:10487144..10488668,2	K562	blood:
2	chr2:10471045..10473599-chr2:10487391..10488938,2	K562	blood:
3	chr2:10487432..10490206-chr2:10500170..10502436,2	K562	blood:
4	chr2:10467079..10470079-chr2:10485960..10489142,3	K562	blood:
5	chr2:10411246..10413017-chr2:10487385..10489486,2	MCF-7	breast:
6	chr2:10487147..10491587-chr2:10493277..10497874,5	MCF-7	breast:
7	chr2:10487325..10490191-chr2:10503603..10505334,3	MCF-7	breast:
8	chr2:10472099..10474167-chr2:10487438..10489460,2	K562	blood:

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10179156	1.00[AMR][1000 genomes]
rs10201917	1.00[AMR][1000 genomes]
rs11677222	1.00[AMR][1000 genomes]
rs16856312	1.00[AMR][1000 genomes]
rs7573195	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10472200-10494200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:10473000-10489200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:10473400-10496200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:10476400-10488600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:10478800-10488400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:10480600-10488200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:10481800-10491400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:10482400-10488000	Enhancers	Pancreas	Pancrea
9	chr2:10483000-10488000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:10483000-10488200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:10483000-10488800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr2:10483200-10488000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr2:10483200-10488000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr2:10483200-10488400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr2:10483400-10488000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr2:10483400-10489400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:10483600-10488000	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr2:10484000-10488200	Enhancers	K562	blood
19	chr2:10484800-10488000	Enhancers	Adipose Nuclei	Adipose
20	chr2:10485000-10488000	Weak transcription	Fetal Brain Female	brain
21	chr2:10485000-10489800	Weak transcription	Primary B cells from cord blood	blood
22	chr2:10485200-10489200	Enhancers	Stomach Mucosa	stomach
23	chr2:10485200-10500200	Weak transcription	Brain Anterior Caudate	brain
24	chr2:10485200-10500200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:10485800-10488000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr2:10485800-10488200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:10485800-10488400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr2:10485800-10488400	Enhancers	Duodenum Mucosa	Duodenum
29	chr2:10486000-10488000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:10486000-10488000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:10486000-10488000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr2:10486000-10488000	Enhancers	Left Ventricle	heart
33	chr2:10486000-10488000	Enhancers	Lung	lung
34	chr2:10486000-10488200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr2:10486000-10488200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:10486000-10488200	Enhancers	Primary B cells from peripheral blood	blood
37	chr2:10486000-10488200	Enhancers	Fetal Lung	lung
38	chr2:10486000-10489000	Enhancers	Primary T cells fromperipheralblood	blood
39	chr2:10486000-10489000	Enhancers	Fetal Muscle Leg	muscle
40	chr2:10486000-10489600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr2:10486000-10489600	Enhancers	HUVEC	blood vessel
42	chr2:10486000-10491600	Enhancers	Liver	Liver
43	chr2:10486200-10488000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:10486200-10488200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr2:10486200-10488200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr2:10486200-10488200	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr2:10486200-10488200	Enhancers	HSMMtube	muscle
48	chr2:10486200-10488400	Enhancers	Fetal Brain Male	brain
49	chr2:10486400-10488000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr2:10486400-10488000	Enhancers	Brain Hippocampus Middle	brain

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