Variant report

Variant	rs7573195
Chromosome Location	chr2:10495719-10495720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10493764..10496007-chr2:10502686..10505451,2	K562	blood:
2	chr2:10493099..10495765-chr2:10590269..10592388,2	MCF-7	breast:
3	chr2:10487147..10491587-chr2:10493277..10497874,5	MCF-7	breast:
4	chr2:10465569..10467563-chr2:10493687..10496492,2	MCF-7	breast:
5	chr2:10477673..10479224-chr2:10494997..10496911,2	K562	blood:
6	chr2:10441968..10443671-chr2:10494298..10497268,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115756	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73161288	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv873642	chr2:10491985-10532869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10473400-10496200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr2:10485200-10500200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:10485200-10500200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:10486400-10497400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:10486600-10500200	Weak transcription	Brain Substantia Nigra	brain
6	chr2:10486800-10497400	Weak transcription	Brain Germinal Matrix	brain
7	chr2:10487000-10500800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:10487800-10496400	Weak transcription	Gastric	stomach
9	chr2:10487800-10496400	Weak transcription	Right Ventricle	heart
10	chr2:10487800-10501400	Weak transcription	Fetal Kidney	kidney
11	chr2:10487800-10502200	Weak transcription	Psoas Muscle	Psoas
12	chr2:10487800-10509200	Weak transcription	Small Intestine	intestine
13	chr2:10487800-10514600	Weak transcription	Fetal Thymus	thymus
14	chr2:10487800-10517800	Weak transcription	Colonic Mucosa	Colon
15	chr2:10487800-10518000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:10488000-10496000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:10488000-10496000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:10488000-10496000	Weak transcription	Pancreas	Pancrea
19	chr2:10488000-10496200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:10488000-10498600	Weak transcription	Thymus	Thymus
21	chr2:10488000-10500200	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:10488000-10500200	Weak transcription	Left Ventricle	heart
23	chr2:10488000-10500800	Weak transcription	HSMM	muscle
24	chr2:10488000-10506800	Weak transcription	Osteobl	bone
25	chr2:10488200-10496200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:10488200-10497200	Weak transcription	K562	blood
27	chr2:10488200-10500200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr2:10488200-10500600	Weak transcription	Fetal Lung	lung
29	chr2:10488200-10501200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:10488200-10503000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr2:10488200-10512000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr2:10489200-10496000	Weak transcription	Stomach Mucosa	stomach
33	chr2:10489200-10501000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr2:10489200-10521400	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:10490200-10496200	Strong transcription	Fetal Intestine Small	intestine
36	chr2:10490200-10498600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr2:10490400-10496800	Weak transcription	Fetal Brain Male	brain
38	chr2:10490400-10508600	Weak transcription	Aorta	Aorta
39	chr2:10491600-10496000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr2:10491600-10496000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr2:10491800-10498800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr2:10492000-10515000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr2:10492400-10498200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr2:10492600-10516000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr2:10492800-10498200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr2:10493000-10496600	Weak transcription	Fetal Muscle Leg	muscle
47	chr2:10493000-10499200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr2:10493000-10520200	Weak transcription	HMEC	breast
49	chr2:10493400-10499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr2:10494000-10495800	Strong transcription	Primary monocytes fromperipheralblood	blood

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