Variant report

Variant	rs11678501
Chromosome Location	chr2:188919210-188919211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:188917990..188920896-chr2:189154942..189156576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144366	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11674292	1.00[EUR][1000 genomes]
rs11679720	1.00[EUR][1000 genomes]
rs11680235	1.00[EUR][1000 genomes]
rs11685495	1.00[EUR][1000 genomes]
rs11686476	1.00[EUR][1000 genomes]
rs11687577	1.00[EUR][1000 genomes]
rs11691788	1.00[EUR][1000 genomes]
rs11692575	1.00[EUR][1000 genomes]
rs11695469	1.00[EUR][1000 genomes]
rs12151778	1.00[EUR][1000 genomes]
rs12185535	1.00[EUR][1000 genomes]
rs12185546	1.00[EUR][1000 genomes]
rs12185596	1.00[EUR][1000 genomes]
rs12185714	1.00[EUR][1000 genomes]
rs12989776	1.00[EUR][1000 genomes]
rs72895717	1.00[EUR][1000 genomes]
rs72895720	1.00[EUR][1000 genomes]
rs72895723	1.00[EUR][1000 genomes]
rs72895727	1.00[EUR][1000 genomes]
rs72895728	1.00[EUR][1000 genomes]
rs72895740	1.00[EUR][1000 genomes]
rs72895757	1.00[EUR][1000 genomes]
rs72897930	1.00[EUR][1000 genomes]
rs72897939	1.00[EUR][1000 genomes]
rs72901578	1.00[EUR][1000 genomes]
rs72901590	1.00[EUR][1000 genomes]
rs72901594	1.00[EUR][1000 genomes]
rs72903509	0.86[EUR][1000 genomes]
rs72903511	0.86[EUR][1000 genomes]
rs72903524	0.86[EUR][1000 genomes]
rs72903526	0.86[EUR][1000 genomes]
rs72903527	0.86[EUR][1000 genomes]
rs72903532	0.86[EUR][1000 genomes]
rs72903537	0.86[EUR][1000 genomes]
rs72903560	0.86[EUR][1000 genomes]
rs72903582	0.86[EUR][1000 genomes]
rs72903583	0.86[EUR][1000 genomes]
rs72903592	0.86[EUR][1000 genomes]
rs72903876	1.00[EUR][1000 genomes]
rs72903884	1.00[EUR][1000 genomes]
rs72903890	1.00[EUR][1000 genomes]
rs72903892	1.00[EUR][1000 genomes]
rs72903902	1.00[EUR][1000 genomes]
rs72907958	1.00[EUR][1000 genomes]
rs72907969	1.00[EUR][1000 genomes]
rs72907970	1.00[EUR][1000 genomes]
rs72907987	1.00[EUR][1000 genomes]
rs72909876	1.00[EUR][1000 genomes]
rs72909889	1.00[EUR][1000 genomes]
rs72909891	1.00[EUR][1000 genomes]
rs72909893	1.00[EUR][1000 genomes]
rs72909895	1.00[EUR][1000 genomes]
rs72911709	1.00[EUR][1000 genomes]
rs72911710	1.00[EUR][1000 genomes]
rs72911713	1.00[EUR][1000 genomes]
rs72911720	1.00[EUR][1000 genomes]
rs72911722	1.00[EUR][1000 genomes]
rs72911724	1.00[EUR][1000 genomes]
rs72911729	1.00[EUR][1000 genomes]
rs72911733	1.00[EUR][1000 genomes]
rs72911739	1.00[EUR][1000 genomes]
rs72911740	1.00[EUR][1000 genomes]
rs72911751	1.00[EUR][1000 genomes]
rs72911762	1.00[EUR][1000 genomes]
rs72911775	1.00[EUR][1000 genomes]
rs72911777	1.00[EUR][1000 genomes]
rs72911779	1.00[EUR][1000 genomes]
rs72911782	1.00[EUR][1000 genomes]
rs72911793	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533353	chr2:188498301-189024655	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv584041	chr2:188644642-188928433	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv523293	chr2:188774681-188928433	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv875601	chr2:188871436-188934777	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188905400-188923000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:188911400-188922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:188916200-188922000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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