Variant report

Variant	rs72903884
Chromosome Location	chr2:188909905-188909906
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11673994	1.00[AFR][1000 genomes]
rs11674292	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11678501	1.00[EUR][1000 genomes]
rs11679720	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11680235	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11685495	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11686476	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11687577	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11691788	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11692575	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11695469	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12151778	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12185535	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12185546	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12185596	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12185714	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12989776	1.00[EUR][1000 genomes]
rs72895717	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72895720	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72895723	1.00[EUR][1000 genomes]
rs72895727	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72895728	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72895740	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72895757	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72897930	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72897939	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72899689	1.00[AFR][1000 genomes]
rs72901578	1.00[EUR][1000 genomes]
rs72901590	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72901594	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72901682	1.00[AFR][1000 genomes]
rs72901686	1.00[AFR][1000 genomes]
rs72903509	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72903511	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72903524	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72903526	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72903527	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72903532	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72903537	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72903560	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72903855	1.00[AFR][1000 genomes]
rs72903871	1.00[AFR][1000 genomes]
rs72903876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72903890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72903892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72903902	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72907958	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72907969	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72907970	1.00[EUR][1000 genomes]
rs72907987	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72909876	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72909889	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72909891	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72909893	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72909895	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911709	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911710	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911713	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911720	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911722	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911724	1.00[EUR][1000 genomes]
rs72911729	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911733	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911739	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911740	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911751	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911762	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911775	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911777	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911779	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911782	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72911793	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533353	chr2:188498301-189024655	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875597	chr2:188573244-188916290	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv584041	chr2:188644642-188928433	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv523293	chr2:188774681-188928433	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv875601	chr2:188871436-188934777	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188892600-188911400	Weak transcription	Aorta	Aorta
2	chr2:188899600-188912400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:188904400-188912400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:188905400-188923000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:188905600-188915200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:188905600-188915600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:188907000-188915600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr2:188907000-188916000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:188908200-188912200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:188908400-188915000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:188909000-188911800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:188909600-188910600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:188909600-188912400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:188909800-188915000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:188909800-188915600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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