Variant report

Variant	rs11681174
Chromosome Location	chr2:31278254-31278255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72854834	0.89[AFR][1000 genomes]
rs72854839	0.89[AFR][1000 genomes]
rs72854851	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31275000-31281000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:31275400-31278600	Weak transcription	Spleen	Spleen
3	chr2:31275600-31278400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:31276800-31278800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:31277000-31278400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:31277000-31278600	Enhancers	Fetal Kidney	kidney
7	chr2:31277000-31278800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:31277200-31279000	Enhancers	Fetal Intestine Large	intestine
9	chr2:31277400-31278400	Weak transcription	Left Ventricle	heart
10	chr2:31277400-31278600	Enhancers	Fetal Heart	heart
11	chr2:31277400-31278800	Enhancers	Duodenum Mucosa	Duodenum
12	chr2:31277400-31278800	Enhancers	Fetal Intestine Small	intestine
13	chr2:31277600-31280800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:31277800-31278800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr2:31278200-31278800	Enhancers	Small Intestine	intestine
16	chr2:31278200-31283600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr2:31278200-31293000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:31278200-31310800	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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