Variant report

Variant	rs72854839
Chromosome Location	chr2:31277033-31277034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11681174	0.89[AFR][1000 genomes]
rs17010623	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56807379	1.00[EUR][1000 genomes]
rs60000683	1.00[EUR][1000 genomes]
rs6726827	1.00[EUR][1000 genomes]
rs72854822	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72854824	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72854829	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72854834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72854851	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72854856	1.00[EUR][1000 genomes]
rs73923381	1.00[EUR][1000 genomes]
rs9308915	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31275000-31277200	Weak transcription	Fetal Intestine Large	intestine
2	chr2:31275000-31277200	Weak transcription	Small Intestine	intestine
3	chr2:31275000-31281000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:31275200-31277400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:31275400-31278200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:31275400-31278600	Weak transcription	Spleen	Spleen
7	chr2:31275600-31277400	Weak transcription	Fetal Intestine Small	intestine
8	chr2:31275600-31277600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:31275600-31277800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:31275600-31278400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:31276800-31277400	Enhancers	Pancreas	Pancrea
12	chr2:31276800-31277600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr2:31276800-31278800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:31277000-31278400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:31277000-31278600	Enhancers	Fetal Kidney	kidney
16	chr2:31277000-31278800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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