Variant report

Variant	rs11681384
Chromosome Location	chr2:173932003-173932004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10180382	1.00[ASN][1000 genomes]
rs11692252	0.95[ASN][1000 genomes]
rs1545516	0.89[ASN][1000 genomes]
rs2034647	0.89[ASN][1000 genomes]
rs2044515	0.89[ASN][1000 genomes]
rs2358084	0.95[ASN][1000 genomes]
rs3754748	0.95[ASN][1000 genomes]
rs3769207	0.89[ASN][1000 genomes]
rs6718374	1.00[ASN][1000 genomes]
rs6727541	0.82[ASN][1000 genomes]
rs6733082	0.86[ASN][1000 genomes]
rs6758859	0.81[ASN][1000 genomes]
rs7558132	1.00[ASN][1000 genomes]
rs7558553	1.00[ASN][1000 genomes]
rs7608532	0.95[ASN][1000 genomes]
rs9636294	0.86[ASN][1000 genomes]
rs989531	0.96[ASN][1000 genomes]
rs989532	0.95[ASN][1000 genomes]
rs990416	1.00[ASN][1000 genomes]
rs990417	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3398477	chr2:173931056-173932104	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11681384	ZAK	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173920600-173937200	Weak transcription	Psoas Muscle	Psoas
2	chr2:173928400-173932400	Weak transcription	Fetal Intestine Large	intestine
3	chr2:173929200-173932200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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