Variant report

Variant	rs11692252
Chromosome Location	chr2:173929607-173929608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173925105..173930317-chr2:173940081..173942061,4	MCF-7	breast:
2	chr2:173914420..173916630-chr2:173929011..173931353,2	MCF-7	breast:
3	chr2:173928959..173932871-chr2:173938531..173941306,7	MCF-7	breast:
4	chr2:173924776..173926488-chr2:173927922..173930714,2	K562	blood:

Variant related genes	Relation type
ENSG00000091436	Chromatin interaction
ENSG00000265709	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10180382	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10930577	0.88[JPT][hapmap]
rs11681384	0.95[ASN][1000 genomes]
rs1545516	0.91[ASN][1000 genomes]
rs17760899	0.88[JPT][hapmap]
rs2034647	0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2044515	0.91[ASN][1000 genomes]
rs2358084	0.84[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754745	0.88[JPT][hapmap]
rs3754748	0.92[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769207	0.91[ASN][1000 genomes]
rs6718374	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6727541	0.84[ASN][1000 genomes]
rs6733082	0.88[ASN][1000 genomes]
rs6735275	0.88[JPT][hapmap]
rs6746656	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs6758859	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6759787	0.88[JPT][hapmap]
rs7558132	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7558553	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7573673	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7608532	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9636294	0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs989531	0.92[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs989532	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990416	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs990417	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2606171	chr2:173928830-173930264	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2626864	chr2:173929605-173929607	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv197334	chr2:173929605-173929607	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2166856	chr2:173929605-173929608	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173920600-173937200	Weak transcription	Psoas Muscle	Psoas
2	chr2:173925200-173930400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:173926200-173930000	Weak transcription	Ovary	ovary
4	chr2:173928400-173932400	Weak transcription	Fetal Intestine Large	intestine
5	chr2:173928600-173930200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:173928800-173930600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:173929200-173932200	Weak transcription	Fetal Intestine Small	intestine
8	chr2:173929400-173931600	Weak transcription	Fetal Lung	lung

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