Variant report

Variant	rs1168578
Chromosome Location	chr10:27911359-27911360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1168575	0.82[EUR][1000 genomes]
rs1168577	0.82[EUR][1000 genomes]
rs1168579	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168580	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2642303	0.97[ASN][1000 genomes]
rs2642304	0.93[ASN][1000 genomes]
rs2815572	0.97[ASN][1000 genomes]
rs752125	1.00[ASN][1000 genomes]
rs923909	1.00[ASN][1000 genomes]
rs988394	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27904000-27913800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27904400-27914000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:27904400-27914600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:27907200-27913600	Enhancers	Fetal Muscle Leg	muscle
5	chr10:27909000-27911800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:27909800-27914000	Weak transcription	Brain Germinal Matrix	brain
7	chr10:27910600-27911800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:27910600-27912400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:27910600-27912800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:27910600-27913400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:27910800-27911400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:27910800-27912000	Enhancers	Osteobl	bone
13	chr10:27910800-27912400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:27910800-27913400	Weak transcription	Fetal Stomach	stomach
15	chr10:27910800-27913600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:27910800-27913600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:27910800-27913600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:27910800-27913800	Weak transcription	Adipose Nuclei	Adipose
19	chr10:27910800-27923000	Weak transcription	Aorta	Aorta
20	chr10:27911000-27913800	Weak transcription	HSMMtube	muscle
21	chr10:27911000-27914200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:27911000-27914200	Weak transcription	HSMM	muscle
23	chr10:27911000-27914200	Enhancers	NHDF-Ad	bronchial
24	chr10:27911200-27912400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links