Variant report

Variant	rs752125
Chromosome Location	chr10:27910592-27910593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27909294..27910994-chr10:27914195..27916114,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1168578	1.00[ASN][1000 genomes]
rs1168579	1.00[ASN][1000 genomes]
rs1168580	0.99[ASN][1000 genomes]
rs1494199	0.80[AMR][1000 genomes]
rs1494203	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1494204	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1494205	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1552879	0.83[AMR][1000 genomes]
rs1603021	0.80[AMR][1000 genomes]
rs2637300	0.83[AMR][1000 genomes]
rs2637311	0.81[AMR][1000 genomes]
rs2637312	0.81[AMR][1000 genomes]
rs2637313	0.83[AMR][1000 genomes]
rs2642287	0.81[AMR][1000 genomes]
rs2642288	0.81[AMR][1000 genomes]
rs2642289	0.83[AMR][1000 genomes]
rs2642303	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2642304	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815513	0.83[AMR][1000 genomes]
rs2815514	0.83[AMR][1000 genomes]
rs2815515	0.83[AMR][1000 genomes]
rs2815518	0.83[AMR][1000 genomes]
rs2815520	0.81[AMR][1000 genomes]
rs2815521	0.83[AMR][1000 genomes]
rs2815522	0.83[AMR][1000 genomes]
rs2815523	0.83[AMR][1000 genomes]
rs2815524	0.83[AMR][1000 genomes]
rs2815525	0.83[AMR][1000 genomes]
rs2815526	0.83[AMR][1000 genomes]
rs2815529	0.81[AMR][1000 genomes]
rs2815530	0.80[AMR][1000 genomes]
rs2815531	0.80[AMR][1000 genomes]
rs2815533	0.81[AMR][1000 genomes]
rs2815572	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs923909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997462	0.83[AMR][1000 genomes]
rs997750	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27904000-27913800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27904400-27914000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:27904400-27914600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:27907200-27913600	Enhancers	Fetal Muscle Leg	muscle
5	chr10:27908200-27910800	Enhancers	Fetal Stomach	stomach
6	chr10:27908600-27910800	Enhancers	Adipose Nuclei	Adipose
7	chr10:27909000-27911800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:27909400-27910600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:27909400-27910600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:27909400-27910600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:27909400-27910600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:27909400-27910600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:27909400-27910600	Enhancers	HMEC	breast
14	chr10:27909400-27910800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:27909400-27910800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:27909400-27910800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr10:27909400-27910800	Enhancers	Fetal Lung	lung
18	chr10:27909400-27910800	Flanking Active TSS	Osteobl	bone
19	chr10:27909400-27911000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr10:27909600-27910600	Enhancers	NHEK	skin
21	chr10:27909800-27910800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:27909800-27914000	Weak transcription	Brain Germinal Matrix	brain
23	chr10:27910000-27910600	Active TSS	Stomach Smooth Muscle	stomach
24	chr10:27910200-27910600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:27910200-27910600	Flanking Active TSS	Colon Smooth Muscle	Colon
26	chr10:27910200-27910600	Enhancers	HSMM	muscle
27	chr10:27910200-27910800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:27910200-27910800	Enhancers	Psoas Muscle	Psoas
29	chr10:27910400-27910600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:27910400-27910800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:27910400-27910800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:27910400-27910800	Enhancers	Aorta	Aorta
33	chr10:27910400-27910800	Enhancers	Ovary	ovary
34	chr10:27910400-27911000	Enhancers	HSMMtube	muscle
35	chr10:27910400-27911000	Flanking Active TSS	NHDF-Ad	bronchial

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