Variant report

Variant	rs11687864
Chromosome Location	chr2:100946993-100946994
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:100944968..100947303-chr2:100956166..100958150,2	MCF-7	breast:
2	chr2:100944919..100947435-chr2:100949104..100951450,2	K562	blood:
3	chr2:100937505..100939944-chr2:100946507..100949151,3	MCF-7	breast:
4	chr2:100941656..100944557-chr2:100945932..100948879,2	K562	blood:

Variant related genes	Relation type
ENSG00000170500	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10048665	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10174145	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10182399	0.80[AMR][1000 genomes]
rs10202326	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1030902	0.83[ASN][1000 genomes]
rs11123826	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11123827	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11674569	0.82[ASN][1000 genomes]
rs11674830	0.83[ASN][1000 genomes]
rs11675901	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11678148	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11678158	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11680660	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11682557	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11682748	0.86[ASN][1000 genomes]
rs11684004	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11684516	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11685250	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11685406	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11686293	0.82[ASN][1000 genomes]
rs11686649	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11686799	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11686842	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11686880	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11687865	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11688285	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11689439	0.83[ASN][1000 genomes]
rs11691135	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11693044	0.82[ASN][1000 genomes]
rs11693424	0.83[ASN][1000 genomes]
rs11693471	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11694642	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11694700	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11892034	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12615466	0.82[ASN][1000 genomes]
rs12617779	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12618908	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12621892	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12622318	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12989897	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12990688	0.82[ASN][1000 genomes]
rs12991172	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12991577	0.82[ASN][1000 genomes]
rs12997725	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12999151	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13001423	0.83[ASN][1000 genomes]
rs13021801	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13026570	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13031711	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13031906	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1530028	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1530029	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1530030	0.82[ASN][1000 genomes]
rs2164847	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2241810	0.82[ASN][1000 genomes]
rs2309798	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2309852	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4149510	0.82[ASN][1000 genomes]
rs4149512	0.82[ASN][1000 genomes]
rs4149513	0.82[ASN][1000 genomes]
rs4149518	0.82[ASN][1000 genomes]
rs4264577	0.82[EUR][1000 genomes]
rs4387816	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4477940	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4850927	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4851292	0.83[ASN][1000 genomes]
rs4851294	0.82[EUR][1000 genomes]
rs4851297	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4851298	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4851300	0.87[ASN][1000 genomes]
rs4851302	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4851304	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4851305	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4851310	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4851311	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62148360	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6716636	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6725052	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6731549	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6736311	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6737217	0.83[ASN][1000 genomes]
rs6757754	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74177694	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74177695	0.84[AMR][1000 genomes]
rs74177696	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7425449	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7425797	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7597615	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs893416	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv2753837	chr2:100928086-100955814	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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