Variant report

Variant	rs4851300
Chromosome Location	chr2:100958804-100958805
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:100958458..100960134-chr2:100961869..100964277,2	K562	blood:
2	chr2:100952978..100954595-chr2:100957263..100960218,2	MCF-7	breast:
3	chr2:100937601..100941206-chr2:100954662..100959386,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170500	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10202326	1.00[ASN][1000 genomes]
rs1030902	0.96[ASN][1000 genomes]
rs10460478	0.87[ASN][1000 genomes]
rs11123827	1.00[ASN][1000 genomes]
rs11674569	0.95[ASN][1000 genomes]
rs11674830	0.96[ASN][1000 genomes]
rs11675901	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11678148	1.00[ASN][1000 genomes]
rs11678158	0.99[ASN][1000 genomes]
rs11682557	1.00[ASN][1000 genomes]
rs11682748	0.99[ASN][1000 genomes]
rs11683121	0.87[ASN][1000 genomes]
rs11684004	1.00[ASN][1000 genomes]
rs11684516	1.00[ASN][1000 genomes]
rs11685250	1.00[ASN][1000 genomes]
rs11685406	1.00[ASN][1000 genomes]
rs11686293	0.95[ASN][1000 genomes]
rs11686649	1.00[ASN][1000 genomes]
rs11686799	1.00[ASN][1000 genomes]
rs11686842	1.00[ASN][1000 genomes]
rs11686880	1.00[ASN][1000 genomes]
rs11687352	0.87[ASN][1000 genomes]
rs11687864	0.87[ASN][1000 genomes]
rs11687865	0.95[ASN][1000 genomes]
rs11688285	1.00[ASN][1000 genomes]
rs11689439	0.97[ASN][1000 genomes]
rs11691684	0.88[ASN][1000 genomes]
rs11693044	0.95[ASN][1000 genomes]
rs11693424	0.97[ASN][1000 genomes]
rs11693471	1.00[ASN][1000 genomes]
rs11694642	0.98[ASN][1000 genomes]
rs11895772	0.85[AMR][1000 genomes]
rs12615466	0.95[ASN][1000 genomes]
rs12618908	1.00[ASN][1000 genomes]
rs12621892	1.00[ASN][1000 genomes]
rs12622318	0.99[ASN][1000 genomes]
rs12989897	1.00[ASN][1000 genomes]
rs12990688	0.95[ASN][1000 genomes]
rs12991577	0.95[ASN][1000 genomes]
rs13001423	0.97[ASN][1000 genomes]
rs13006224	0.90[ASN][1000 genomes]
rs13023534	0.91[ASN][1000 genomes]
rs1437969	0.87[ASN][1000 genomes]
rs1530028	0.99[ASN][1000 genomes]
rs1530029	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1530030	0.95[ASN][1000 genomes]
rs1811415	0.85[ASN][1000 genomes]
rs1866198	0.87[ASN][1000 genomes]
rs2164847	1.00[ASN][1000 genomes]
rs2241809	0.91[ASN][1000 genomes]
rs2241810	0.95[ASN][1000 genomes]
rs2309798	1.00[ASN][1000 genomes]
rs2309852	0.96[ASN][1000 genomes]
rs4149510	0.95[ASN][1000 genomes]
rs4149512	0.95[ASN][1000 genomes]
rs4149513	0.95[ASN][1000 genomes]
rs4149518	0.95[ASN][1000 genomes]
rs4378827	0.86[ASN][1000 genomes]
rs4387816	1.00[ASN][1000 genomes]
rs4477940	1.00[ASN][1000 genomes]
rs4640404	0.86[ASN][1000 genomes]
rs4851292	0.97[ASN][1000 genomes]
rs4851297	0.97[ASN][1000 genomes]
rs4851298	1.00[ASN][1000 genomes]
rs4851302	1.00[ASN][1000 genomes]
rs4851304	1.00[ASN][1000 genomes]
rs4851305	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4851310	1.00[ASN][1000 genomes]
rs4851311	1.00[ASN][1000 genomes]
rs4851315	0.83[EUR][1000 genomes]
rs62148360	0.95[ASN][1000 genomes]
rs6542940	0.91[ASN][1000 genomes]
rs6736311	1.00[ASN][1000 genomes]
rs6737217	0.96[ASN][1000 genomes]
rs6757754	1.00[ASN][1000 genomes]
rs74177694	0.92[ASN][1000 genomes]
rs74177696	0.97[ASN][1000 genomes]
rs7425449	0.99[ASN][1000 genomes]
rs7425797	0.99[ASN][1000 genomes]
rs7597615	1.00[ASN][1000 genomes]
rs893416	1.00[ASN][1000 genomes]
rs920269	0.87[ASN][1000 genomes]
rs9646954	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv834311	chr2:100816917-100990036	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100956800-100967200	Weak transcription	Gastric	stomach

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