Variant report
| Variant | rs11689801 |
|---|---|
| Chromosome Location | chr2:76669312-76669313 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11126526 | 0.90[ASN][1000 genomes] |
| rs11126527 | 0.92[ASN][1000 genomes] |
| rs11126528 | 0.92[ASN][1000 genomes] |
| rs11126529 | 0.92[ASN][1000 genomes] |
| rs11126532 | 0.90[ASN][1000 genomes] |
| rs11673982 | 0.92[ASN][1000 genomes] |
| rs11680215 | 0.95[ASN][1000 genomes] |
| rs11683360 | 0.96[ASN][1000 genomes] |
| rs11683701 | 0.90[ASN][1000 genomes] |
| rs11685760 | 0.91[ASN][1000 genomes] |
| rs11685768 | 0.91[ASN][1000 genomes] |
| rs12185674 | 0.90[ASN][1000 genomes] |
| rs12185689 | 0.90[ASN][1000 genomes] |
| rs12478286 | 0.92[ASN][1000 genomes] |
| rs17516364 | 0.84[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17517219 | 0.90[ASN][1000 genomes] |
| rs17575651 | 0.84[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1921226 | 0.86[ASN][1000 genomes] |
| rs1921230 | 0.86[ASN][1000 genomes] |
| rs1962225 | 0.92[ASN][1000 genomes] |
| rs2860777 | 0.92[ASN][1000 genomes] |
| rs4146907 | 0.90[ASN][1000 genomes] |
| rs4146908 | 0.90[ASN][1000 genomes] |
| rs56271787 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6720869 | 0.92[ASN][1000 genomes] |
| rs6745935 | 0.92[ASN][1000 genomes] |
| rs72809041 | 0.92[ASN][1000 genomes] |
| rs72809061 | 0.94[ASN][1000 genomes] |
| rs72809093 | 0.91[ASN][1000 genomes] |
| rs7590380 | 0.86[ASN][1000 genomes] |
| rs7604513 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006097 | chr2:76524248-76675427 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2757809 | chr2:76541920-76705354 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2759064 | chr2:76541920-76705354 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv874317 | chr2:76554077-76890567 | Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1013614 | chr2:76624220-76715121 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv582227 | chr2:76662404-76712789 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76659200-76677000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
