Variant report
| Variant | rs1921226 |
|---|---|
| Chromosome Location | chr2:76726553-76726554 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11126526 | 0.93[ASN][1000 genomes] |
| rs11126527 | 0.91[ASN][1000 genomes] |
| rs11126528 | 0.90[ASN][1000 genomes] |
| rs11126529 | 0.91[ASN][1000 genomes] |
| rs11126532 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11673982 | 0.91[ASN][1000 genomes] |
| rs11680215 | 0.91[ASN][1000 genomes] |
| rs11683360 | 0.83[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs11683701 | 0.96[ASN][1000 genomes] |
| rs11685760 | 0.93[ASN][1000 genomes] |
| rs11685768 | 0.93[ASN][1000 genomes] |
| rs11689801 | 0.86[ASN][1000 genomes] |
| rs12185674 | 0.96[ASN][1000 genomes] |
| rs12185689 | 0.96[ASN][1000 genomes] |
| rs12478286 | 0.91[ASN][1000 genomes] |
| rs17516364 | 0.86[ASN][1000 genomes] |
| rs17517219 | 0.96[ASN][1000 genomes] |
| rs17575651 | 0.94[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1921230 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1962225 | 0.90[ASN][1000 genomes] |
| rs2860777 | 0.91[ASN][1000 genomes] |
| rs4146907 | 0.96[ASN][1000 genomes] |
| rs4146908 | 0.96[ASN][1000 genomes] |
| rs56271787 | 0.87[ASN][1000 genomes] |
| rs6720869 | 0.91[ASN][1000 genomes] |
| rs6745935 | 0.91[ASN][1000 genomes] |
| rs72809041 | 0.84[ASN][1000 genomes] |
| rs72809061 | 0.92[ASN][1000 genomes] |
| rs72809093 | 0.93[ASN][1000 genomes] |
| rs7590380 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7604513 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874317 | chr2:76554077-76890567 | Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76720000-76728800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr2:76724400-76726600 | Enhancers | Fetal Heart | heart |
