Variant report

Variant	rs11690037
Chromosome Location	chr2:183205553-183205554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1121403	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11679657	0.83[CEU][hapmap]
rs11686989	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12328342	0.91[EUR][1000 genomes]
rs1370668	0.83[CEU][hapmap]
rs1383898	0.94[CEU][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs1438069	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs16823047	0.94[CEU][hapmap];0.94[MEX][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16823686	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs6715692	1.00[ASW][hapmap];0.94[CEU][hapmap];0.90[GIH][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs718448	0.94[CEU][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes]
rs7422491	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs7589514	0.94[CEU][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7595025	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs833125	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs833171	0.88[EUR][1000 genomes]
rs833173	0.92[EUR][1000 genomes]
rs833174	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs833176	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs833177	0.92[EUR][1000 genomes]
rs833178	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs833179	0.86[EUR][1000 genomes]
rs833181	0.94[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834481	chr2:183189758-183339577	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183199800-183216800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links