Variant report

Variant	rs6715692
Chromosome Location	chr2:183195681-183195682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10931008	0.85[JPT][hapmap]
rs1121403	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11678230	0.85[JPT][hapmap]
rs11679657	0.89[CEU][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs11686989	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11690037	1.00[ASW][hapmap];0.94[CEU][hapmap];0.90[GIH][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12328342	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12614214	0.83[EUR][1000 genomes]
rs12693302	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12996836	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1370665	0.86[JPT][hapmap]
rs1370666	0.86[JPT][hapmap]
rs1370668	0.89[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs1383898	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1438069	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1595447	0.83[EUR][1000 genomes]
rs16823047	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16823686	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17264887	0.86[JPT][hapmap]
rs17264894	0.81[JPT][hapmap]
rs55773042	0.84[EUR][1000 genomes]
rs6728245	0.80[EUR][1000 genomes]
rs6757164	0.83[EUR][1000 genomes]
rs718448	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7422491	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7589514	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7595025	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs833125	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs833171	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs833173	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs833174	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs833176	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs833177	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs833178	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs833179	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs833181	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs864417	0.95[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv459955	chr2:183170516-183204369	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv459956	chr2:183170516-183204369	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv583916	chr2:183170516-183204369	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv834481	chr2:183189758-183339577	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183188800-183197400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183194600-183196400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:183195200-183195800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:183195200-183195800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:183195200-183195800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr2:183195400-183195800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:183195400-183195800	Enhancers	Right Atrium	heart
8	chr2:183195400-183195800	Enhancers	NHDF-Ad	bronchial
9	chr2:183195400-183195800	Flanking Active TSS	Osteobl	bone
10	chr2:183195400-183196000	Enhancers	Aorta	Aorta
11	chr2:183195600-183195800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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