Variant report

Variant	rs11690860
Chromosome Location	chr2:185578739-185578740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10179499	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2035320	0.85[YRI][hapmap]
rs359875	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs359894	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs415350	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6434092	0.83[YRI][hapmap]
rs6722711	0.80[AFR][1000 genomes]
rs7574128	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7581009	0.83[YRI][hapmap]
rs899846	0.85[YRI][hapmap]
rs922629	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3449521	chr2:185578254-185579498	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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