Variant report

Variant	rs10179499
Chromosome Location	chr2:185625582-185625583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11690860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12693399	1.00[YRI][hapmap]
rs359875	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs359894	1.00[JPT][hapmap]
rs415350	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6755404	0.92[YRI][hapmap]
rs7574128	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs922629	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185624800-185626200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr2:185625200-185625800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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