Variant report

Variant	rs6755404
Chromosome Location	chr2:185797228-185797229
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10179499	0.92[YRI][hapmap]
rs10931156	1.00[JPT][hapmap]
rs12476147	1.00[JPT][hapmap]
rs12693399	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[YRI][hapmap]
rs1344707	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs1429423	0.85[EUR][1000 genomes]
rs2369595	0.89[MEX][hapmap]
rs4666994	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs4666995	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs4666998	0.92[CHB][hapmap]
rs4666999	0.87[ASN][1000 genomes]
rs4667002	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6751736	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs725617	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs7574128	0.93[LWK][hapmap];0.92[YRI][hapmap]
rs7590852	1.00[CEU][hapmap];0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Malaria	23717212	GWAS catalog

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185792000-185805000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:185796800-185798200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:185797200-185798200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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