Variant report

Variant	rs2369595
Chromosome Location	chr2:185626426-185626427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10167859	0.83[YRI][hapmap]
rs10190062	0.83[YRI][hapmap]
rs10197925	0.85[JPT][hapmap]
rs10198049	0.85[JPT][hapmap]
rs10201360	0.83[YRI][hapmap]
rs10206426	0.83[YRI][hapmap]
rs10210216	1.00[JPT][hapmap]
rs1021043	0.85[JPT][hapmap]
rs10931155	1.00[JPT][hapmap]
rs11891662	0.85[JPT][hapmap]
rs11900132	0.85[JPT][hapmap]
rs11901504	1.00[JPT][hapmap]
rs12693381	0.82[JPT][hapmap]
rs12693384	0.85[JPT][hapmap]
rs12693385	0.85[JPT][hapmap]
rs12693394	0.83[YRI][hapmap]
rs12693399	0.85[CHB][hapmap]
rs13012514	0.88[YRI][hapmap]
rs13012893	0.83[YRI][hapmap]
rs13026742	1.00[JPT][hapmap]
rs13388087	1.00[JPT][hapmap]
rs13393273	0.85[JPT][hapmap]
rs13401381	1.00[JPT][hapmap]
rs13408744	0.83[YRI][hapmap]
rs13417466	0.83[YRI][hapmap]
rs1344707	1.00[JPT][hapmap]
rs1366838	1.00[JPT][hapmap]
rs1366839	1.00[JPT][hapmap]
rs1366840	1.00[JPT][hapmap]
rs1427150	0.85[JPT][hapmap]
rs1429427	1.00[JPT][hapmap]
rs1480478	0.85[JPT][hapmap]
rs1480481	0.86[JPT][hapmap]
rs1480486	0.83[YRI][hapmap]
rs16826178	0.83[YRI][hapmap]
rs17508595	0.85[JPT][hapmap]
rs1835172	1.00[JPT][hapmap]
rs1987025	0.83[YRI][hapmap]
rs2054548	1.00[JPT][hapmap]
rs2059923	1.00[JPT][hapmap]
rs2059924	1.00[JPT][hapmap]
rs2170202	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170203	0.86[JPT][hapmap]
rs359882	0.85[JPT][hapmap]
rs359884	0.85[JPT][hapmap]
rs359885	0.85[JPT][hapmap]
rs359886	0.85[JPT][hapmap]
rs359892	0.85[JPT][hapmap]
rs4278895	0.83[YRI][hapmap]
rs4666994	0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs4666995	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4666998	1.00[JPT][hapmap]
rs55782979	0.94[EUR][1000 genomes]
rs6434095	0.85[JPT][hapmap]
rs6434096	0.85[JPT][hapmap]
rs6434100	0.83[YRI][hapmap]
rs6434102	0.83[YRI][hapmap]
rs6716151	0.83[YRI][hapmap]
rs6716235	0.83[YRI][hapmap]
rs6728615	0.83[YRI][hapmap]
rs6742299	0.83[YRI][hapmap]
rs6749691	0.83[YRI][hapmap]
rs6755404	0.89[MEX][hapmap]
rs6759491	0.83[YRI][hapmap]
rs725617	0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs7568655	0.83[YRI][hapmap]
rs7582887	0.83[YRI][hapmap]
rs7590852	0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs7594906	1.00[JPT][hapmap]
rs7603001	1.00[JPT][hapmap]
rs7608284	0.85[JPT][hapmap]
rs7608386	0.83[YRI][hapmap]
rs899847	0.85[JPT][hapmap]
rs9288106	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2369595	NCKAP1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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