Variant report

Variant	rs11901504
Chromosome Location	chr2:185785610-185785611
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10210216	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10931155	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12477430	0.87[LWK][hapmap];0.81[MKK][hapmap]
rs13026742	1.00[JPT][hapmap]
rs13388087	1.00[JPT][hapmap]
rs13401381	1.00[JPT][hapmap]
rs1344707	1.00[JPT][hapmap]
rs1366838	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1366839	0.96[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366840	0.82[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1429427	1.00[JPT][hapmap]
rs1583049	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1835172	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2059923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2059924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170203	0.86[JPT][hapmap]
rs2369595	1.00[JPT][hapmap]
rs4666994	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4666995	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4666998	1.00[JPT][hapmap]
rs56213902	0.88[ASN][1000 genomes]
rs6751736	0.86[CHB][hapmap]
rs725617	1.00[JPT][hapmap]
rs7590852	1.00[JPT][hapmap]
rs7594906	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7603001	0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185785000-185785800	Enhancers	Fetal Heart	heart

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