Variant report

Variant	rs13388087
Chromosome Location	chr2:185734704-185734705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10210216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10931155	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10931156	0.82[CHB][hapmap]
rs11901504	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12476147	0.82[CHB][hapmap]
rs13026742	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13401381	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1344707	1.00[JPT][hapmap]
rs1366838	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1366839	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1366840	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1366842	1.00[YRI][hapmap]
rs1429427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1480481	0.83[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1583049	0.82[CHB][hapmap]
rs17431742	1.00[CEU][hapmap]
rs1835172	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2059923	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2059924	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2170203	0.85[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2369595	1.00[JPT][hapmap]
rs4666994	1.00[JPT][hapmap]
rs4666995	1.00[JPT][hapmap]
rs4666998	1.00[JPT][hapmap]
rs4667000	0.83[CHB][hapmap];1.00[YRI][hapmap]
rs4667001	1.00[YRI][hapmap]
rs56213902	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6726421	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs725617	1.00[JPT][hapmap]
rs7590852	1.00[JPT][hapmap]
rs7594906	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7603001	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links