Variant report

Variant	rs1583049
Chromosome Location	chr2:185792818-185792819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10210216	0.82[CHB][hapmap]
rs10931155	0.87[CHB][hapmap]
rs10931157	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11901504	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12477430	0.95[CEU][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12693399	1.00[JPT][hapmap]
rs13388087	0.82[CHB][hapmap]
rs1366838	0.87[CHB][hapmap]
rs1366839	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs1366840	0.87[CHB][hapmap]
rs1429427	0.81[CHB][hapmap]
rs1835172	0.87[CHB][hapmap]
rs2059923	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2059924	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs4666999	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6751736	0.96[CEU][hapmap];0.86[CHB][hapmap];0.80[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7594906	0.87[CHB][hapmap]
rs7603001	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185792000-185805000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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