Variant report

Variant	rs12693399
Chromosome Location	chr2:185757011-185757012
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10179499	1.00[YRI][hapmap]
rs1344707	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs1583049	1.00[JPT][hapmap]
rs2369595	0.85[CHB][hapmap]
rs4666994	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4666995	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4666998	0.93[CHB][hapmap]
rs4667002	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6755404	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs725617	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs7574128	1.00[YRI][hapmap]
rs7590852	1.00[CEU][hapmap];0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv821846	chr2:185753228-185774831	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv818104	chr2:185756082-185771745	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv517466	chr2:185756082-185778262	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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