Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:185771455-185771822	GM12891	blood:	n/a	n/a
2	SPI1	chr2:185771424-185771815	HL-60	blood:	n/a	n/a
3	TAL1	chr2:185771534-185771794	K562	blood:	n/a	n/a
4	SPI1	chr2:185771406-185771799	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000237824	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10210216	1.00[JPT][hapmap]
rs10931155	1.00[JPT][hapmap]
rs11901504	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12693399	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs13026742	1.00[JPT][hapmap]
rs13388087	1.00[JPT][hapmap]
rs13401381	1.00[JPT][hapmap]
rs1344707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1366838	1.00[JPT][hapmap]
rs1366839	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1366840	1.00[JPT][hapmap]
rs1429427	1.00[JPT][hapmap]
rs1835172	1.00[JPT][hapmap]
rs2059923	0.80[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2059924	0.80[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2170202	0.87[ASN][1000 genomes]
rs2170203	0.86[JPT][hapmap]
rs2369595	1.00[JPT][hapmap]
rs4666994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4667002	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs6755404	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs725617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7590852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7594906	1.00[JPT][hapmap]
rs7603001	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv821846	chr2:185753228-185774831	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv517466	chr2:185756082-185778262	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185771000-185772000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:185771200-185772200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:185771400-185772000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:185771400-185772000	Enhancers	Fetal Heart	heart

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