Variant report

Variant	rs2170203
Chromosome Location	chr2:185609004-185609005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10188162	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10210216	0.85[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs10931155	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs11901504	0.86[JPT][hapmap]
rs13026742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs13388087	0.85[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs13401381	0.85[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1344707	0.86[JPT][hapmap]
rs1366838	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs1366839	0.86[JPT][hapmap]
rs1366840	0.85[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs1366842	1.00[YRI][hapmap]
rs1429427	0.85[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1480481	0.92[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17430600	0.82[JPT][hapmap]
rs17431742	0.85[CEU][hapmap]
rs1835172	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2054548	1.00[JPT][hapmap]
rs2059923	0.86[JPT][hapmap]
rs2059924	0.86[JPT][hapmap]
rs2369595	0.86[JPT][hapmap]
rs4666994	0.86[JPT][hapmap]
rs4666995	0.86[JPT][hapmap]
rs4666998	0.86[JPT][hapmap]
rs4667000	1.00[YRI][hapmap]
rs4667001	1.00[YRI][hapmap]
rs56213902	0.82[ASN][1000 genomes]
rs6726421	1.00[YRI][hapmap]
rs725617	0.86[JPT][hapmap]
rs7590852	0.86[JPT][hapmap]
rs7594906	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7603001	0.86[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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