Variant report

Variant	rs7590852
Chromosome Location	chr2:185766912-185766913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10210216	1.00[JPT][hapmap]
rs10931155	1.00[JPT][hapmap]
rs11901504	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12693399	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs13026742	1.00[JPT][hapmap]
rs13388087	1.00[JPT][hapmap]
rs13401381	1.00[JPT][hapmap]
rs1344707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1366838	1.00[JPT][hapmap]
rs1366839	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1366840	1.00[JPT][hapmap]
rs1429427	1.00[JPT][hapmap]
rs1835172	1.00[JPT][hapmap]
rs2059923	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2059924	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2170202	0.87[ASN][1000 genomes]
rs2170203	0.86[JPT][hapmap]
rs2369595	0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs4666994	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4667002	0.82[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];0.84[MKK][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs6755404	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs725617	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7594906	1.00[JPT][hapmap]
rs7603001	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv821846	chr2:185753228-185774831	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv818104	chr2:185756082-185771745	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv517466	chr2:185756082-185778262	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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