Variant report

Variant	rs2170202
Chromosome Location	chr2:185599568-185599569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10167859	0.83[YRI][hapmap]
rs10190062	0.83[YRI][hapmap]
rs10201360	0.83[YRI][hapmap]
rs10206426	0.83[YRI][hapmap]
rs10210216	0.86[JPT][hapmap]
rs10931155	0.86[JPT][hapmap]
rs11901504	0.86[JPT][hapmap]
rs12693381	0.82[JPT][hapmap]
rs12693394	0.83[YRI][hapmap]
rs12693399	0.85[CHB][hapmap]
rs13012514	0.88[YRI][hapmap]
rs13012893	0.83[YRI][hapmap]
rs13026742	0.86[JPT][hapmap]
rs13388087	0.86[JPT][hapmap]
rs13401381	0.86[JPT][hapmap]
rs13408744	0.83[YRI][hapmap]
rs13417466	0.83[YRI][hapmap]
rs1344707	0.86[JPT][hapmap]
rs1366838	0.86[JPT][hapmap]
rs1366839	0.86[JPT][hapmap]
rs1366840	0.86[JPT][hapmap]
rs1429427	0.86[JPT][hapmap]
rs1480486	0.83[YRI][hapmap]
rs16826178	0.83[YRI][hapmap]
rs1835172	0.86[JPT][hapmap]
rs1987025	0.83[YRI][hapmap]
rs2054548	0.84[JPT][hapmap]
rs2059923	0.86[JPT][hapmap]
rs2059924	0.86[JPT][hapmap]
rs2369595	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs4278895	0.83[YRI][hapmap]
rs4666994	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4666995	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4666998	0.86[JPT][hapmap]
rs55782979	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6434100	0.83[YRI][hapmap]
rs6434102	0.83[YRI][hapmap]
rs6716151	0.83[YRI][hapmap]
rs6716235	0.83[YRI][hapmap]
rs6728615	0.83[YRI][hapmap]
rs6742299	0.83[YRI][hapmap]
rs6749691	0.83[YRI][hapmap]
rs6759491	0.83[YRI][hapmap]
rs725617	0.86[JPT][hapmap]
rs7568655	0.83[YRI][hapmap]
rs7582887	0.83[YRI][hapmap]
rs7590852	0.86[JPT][hapmap]
rs7594906	0.86[JPT][hapmap]
rs7603001	0.86[JPT][hapmap]
rs7608386	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185593200-185601400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr2:185598200-185599600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:185598800-185599600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:185598800-185599600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:185598800-185599800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:185599000-185599800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:185599000-185600200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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