Variant report

Variant	rs1480481
Chromosome Location	chr2:185547462-185547463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10188162	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10210216	0.83[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs13026742	0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs13388087	0.83[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs13401381	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1429427	0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2054548	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2170203	0.92[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs2369595	0.86[JPT][hapmap]
rs6728764	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185544200-185550600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:185545200-185557000	Weak transcription	Fetal Stomach	stomach
3	chr2:185545400-185548600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:185545800-185552200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:185546000-185550600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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