Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10197925	0.93[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs10198049	0.85[JPT][hapmap]
rs10203158	0.81[CHB][hapmap]
rs1021043	0.93[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap]
rs11891662	0.85[JPT][hapmap]
rs11900132	0.85[JPT][hapmap]
rs12693383	0.81[CHB][hapmap]
rs12693384	0.93[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs12693385	0.85[JPT][hapmap]
rs13393273	0.93[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs13405270	0.92[ASN][1000 genomes]
rs1427150	0.85[JPT][hapmap]
rs1480478	0.85[JPT][hapmap]
rs1480481	0.86[JPT][hapmap]
rs17430600	0.92[CHB][hapmap]
rs17508595	0.85[JPT][hapmap]
rs2054548	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs359882	0.85[JPT][hapmap]
rs359884	0.85[JPT][hapmap]
rs359885	0.85[JPT][hapmap]
rs359886	0.85[JPT][hapmap]
rs359892	0.93[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs359895	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs430040	0.83[ASN][1000 genomes]
rs435822	0.93[CHB][hapmap];0.95[CHD][hapmap];0.83[ASN][1000 genomes]
rs55782979	0.82[ASN][1000 genomes]
rs6434095	0.85[JPT][hapmap]
rs6434096	0.85[JPT][hapmap]
rs6742182	0.82[YRI][hapmap]
rs7608194	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs7608284	0.93[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs899847	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9288106	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3384555	chr2:185537407-185542705	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185538800-185544200	Weak transcription	Brain Germinal Matrix	brain

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