Variant report

Variant	rs1427150
Chromosome Location	chr2:185480633-185480634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1014959	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197925	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10198049	1.00[JPT][hapmap]
rs1021043	1.00[JPT][hapmap]
rs10432495	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11890128	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891662	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11900132	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12693384	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12693385	1.00[JPT][hapmap]
rs13026742	0.85[JPT][hapmap]
rs13393273	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13405270	0.80[ASN][1000 genomes]
rs1480478	1.00[JPT][hapmap]
rs16826057	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17508595	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2052794	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2054548	1.00[JPT][hapmap]
rs2369595	0.85[JPT][hapmap]
rs359882	1.00[JPT][hapmap]
rs359884	1.00[JPT][hapmap]
rs359885	1.00[JPT][hapmap]
rs359886	1.00[JPT][hapmap]
rs359892	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4366862	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55782979	0.87[ASN][1000 genomes]
rs60269985	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6434095	1.00[JPT][hapmap]
rs6434096	1.00[JPT][hapmap]
rs6728764	0.85[JPT][hapmap]
rs73041376	0.92[EUR][1000 genomes]
rs73041379	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73041394	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73043234	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73043238	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7608194	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7608284	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs899847	1.00[JPT][hapmap]
rs9288106	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv1818452	chr2:185428946-185503154	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1427150	NCKAP1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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