Variant report

Variant	rs435822
Chromosome Location	chr2:185469302-185469303
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:185467104..185469455-chr2:185472399..185475002,2	K562	blood:
2	chr2:185463901..185466082-chr2:185467270..185470429,3	K562	blood:
3	chr2:185467312..185469833-chr2:185669598..185671481,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10197925	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10198049	0.82[CHB][hapmap]
rs10203158	0.92[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1021043	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap]
rs12693381	0.95[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12693383	0.96[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs12693384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12693385	0.80[ASW][hapmap];0.82[CHB][hapmap];0.87[LWK][hapmap];0.84[MKK][hapmap]
rs13021843	0.83[ASN][1000 genomes]
rs13393273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13405270	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1480478	0.82[CHB][hapmap];0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17430600	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2054548	0.93[ASW][hapmap];0.81[CHB][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2054549	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2369593	0.81[YRI][hapmap]
rs359882	0.80[ASW][hapmap];0.82[CHB][hapmap];0.87[LWK][hapmap];0.82[MKK][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs359884	0.93[ASW][hapmap];0.82[CHB][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs359885	0.82[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs359886	0.82[CHB][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs359891	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs359892	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs359895	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs403115	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs430040	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55764167	0.83[ASN][1000 genomes]
rs60269985	0.82[ASN][1000 genomes]
rs6434094	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6434095	0.82[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6434096	0.82[CHB][hapmap];0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6728764	0.93[CHB][hapmap];0.95[CHD][hapmap];0.83[ASN][1000 genomes]
rs7564347	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7608194	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7608284	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs899847	0.82[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875497	chr2:185134237-185474770	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv875512	chr2:185300641-185474770	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1818452	chr2:185428946-185503154	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185466000-185479800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:185466800-185471000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:185467000-185470800	Weak transcription	Monocytes-CD14+_RO01746	blood

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