Variant report

Variant	rs11695776
Chromosome Location	chr2:153233879-153233880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153233753..153235879-chr2:153237551..153240472,2	K562	blood:
2	chr2:153232621..153235253-chr2:153237551..153240252,2	K562	blood:
3	chr2:153215582..153217923-chr2:153232272..153234724,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16831013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35589152	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762622	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4544376	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1005012	chr2:153206764-153273886	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153206800-153240800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:153207600-153246400	Weak transcription	Fetal Intestine Small	intestine
3	chr2:153209400-153237000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:153223400-153237000	Weak transcription	Right Atrium	heart
5	chr2:153224200-153234600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:153224800-153246000	Weak transcription	Fetal Stomach	stomach
7	chr2:153226200-153237000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:153226200-153237000	Weak transcription	Aorta	Aorta
9	chr2:153226200-153237000	Weak transcription	Left Ventricle	heart
10	chr2:153226200-153249400	Weak transcription	Right Ventricle	heart
11	chr2:153226200-153251800	Weak transcription	HSMMtube	muscle
12	chr2:153226800-153236600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:153226800-153237000	Weak transcription	NHLF	lung
14	chr2:153226800-153240000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:153227000-153237200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:153227000-153242000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:153227800-153239400	Weak transcription	NHDF-Ad	bronchial
18	chr2:153228000-153236600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:153228800-153234200	Enhancers	Brain Anterior Caudate	brain
20	chr2:153229200-153236600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:153229200-153252400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:153229600-153237000	Weak transcription	Fetal Kidney	kidney
23	chr2:153231400-153237000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr2:153232000-153236800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:153232000-153237400	Enhancers	HepG2	liver
26	chr2:153232200-153237000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:153232600-153239400	Enhancers	Brain Substantia Nigra	brain
28	chr2:153232800-153235200	Enhancers	A549	lung
29	chr2:153233000-153234000	Enhancers	HUVEC	blood vessel
30	chr2:153233000-153234400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr2:153233000-153234600	Enhancers	Lung	lung
32	chr2:153233000-153238400	Enhancers	Brain Angular Gyrus	brain
33	chr2:153233200-153237000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr2:153233200-153237000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:153233200-153240000	Weak transcription	Fetal Muscle Leg	muscle
36	chr2:153233200-153242200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:153233400-153237800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr2:153233400-153249000	Weak transcription	Gastric	stomach
39	chr2:153233600-153234400	Weak transcription	Ovary	ovary
40	chr2:153233600-153234600	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:153233600-153235000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr2:153233600-153235000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:153233600-153235000	Weak transcription	Stomach Mucosa	stomach
44	chr2:153233600-153235200	Weak transcription	Psoas Muscle	Psoas
45	chr2:153233600-153237000	Weak transcription	Pancreas	Pancrea
46	chr2:153233600-153237000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr2:153233600-153237800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr2:153233600-153239000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:153233600-153246200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr2:153233800-153234200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links