Variant report

Variant	rs35589152
Chromosome Location	chr2:153232841-153232842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153231246..153233171-chr2:153235303..153238284,3	MCF-7	breast:
2	chr2:153232621..153235253-chr2:153237551..153240252,2	K562	blood:
3	chr2:153215582..153217923-chr2:153232272..153234724,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11695776	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762622	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4544376	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1005012	chr2:153206764-153273886	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153203000-153233000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:153206800-153240800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:153207600-153246400	Weak transcription	Fetal Intestine Small	intestine
4	chr2:153209400-153237000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:153216600-153233400	Weak transcription	Fetal Lung	lung
6	chr2:153223400-153237000	Weak transcription	Right Atrium	heart
7	chr2:153224200-153234600	Weak transcription	Adipose Nuclei	Adipose
8	chr2:153224600-153233000	Weak transcription	Pancreas	Pancrea
9	chr2:153224800-153246000	Weak transcription	Fetal Stomach	stomach
10	chr2:153226200-153233000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:153226200-153233200	Weak transcription	Hela-S3	cervix
12	chr2:153226200-153237000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:153226200-153237000	Weak transcription	Aorta	Aorta
14	chr2:153226200-153237000	Weak transcription	Left Ventricle	heart
15	chr2:153226200-153249400	Weak transcription	Right Ventricle	heart
16	chr2:153226200-153251800	Weak transcription	HSMMtube	muscle
17	chr2:153226800-153233000	Weak transcription	Gastric	stomach
18	chr2:153226800-153236600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr2:153226800-153237000	Weak transcription	NHLF	lung
20	chr2:153226800-153240000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:153227000-153237200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:153227000-153242000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:153227800-153239400	Weak transcription	NHDF-Ad	bronchial
24	chr2:153228000-153233000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:153228000-153236600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:153228800-153234200	Enhancers	Brain Anterior Caudate	brain
27	chr2:153229200-153233000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:153229200-153236600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:153229200-153252400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr2:153229400-153233400	Weak transcription	Colon Smooth Muscle	Colon
31	chr2:153229600-153233000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr2:153229600-153237000	Weak transcription	Fetal Kidney	kidney
33	chr2:153231400-153237000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr2:153232000-153233000	Weak transcription	Brain Angular Gyrus	brain
35	chr2:153232000-153233000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr2:153232000-153233000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr2:153232000-153233000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:153232000-153233000	Weak transcription	Lung	lung
39	chr2:153232000-153233000	Weak transcription	Ovary	ovary
40	chr2:153232000-153236800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr2:153232000-153237400	Enhancers	HepG2	liver
42	chr2:153232200-153237000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr2:153232600-153233200	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr2:153232600-153233600	Enhancers	Psoas Muscle	Psoas
45	chr2:153232600-153233800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr2:153232600-153233800	Enhancers	NHEK	skin
47	chr2:153232600-153239400	Enhancers	Brain Substantia Nigra	brain
48	chr2:153232800-153233000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:153232800-153233200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr2:153232800-153233200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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