Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10451716	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11700121	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs12053607	0.87[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs16986939	0.83[ASN][1000 genomes]
rs2076081	0.89[CEU][hapmap]
rs2076082	0.89[CEU][hapmap]
rs34142295	0.83[ASN][1000 genomes]
rs35578581	0.83[ASN][1000 genomes]
rs6016798	0.89[CEU][hapmap]
rs6016800	0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs6016803	0.92[CEU][hapmap]
rs6030251	0.92[CEU][hapmap]
rs6030252	0.93[CEU][hapmap]
rs6030254	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6030257	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6030264	0.83[ASN][1000 genomes]
rs6065482	0.89[CEU][hapmap]
rs6065484	0.82[ASN][1000 genomes]
rs6102839	0.87[CHB][hapmap]
rs6124458	0.95[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs6130133	0.87[CHB][hapmap]
rs6130134	0.87[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs6130135	0.83[ASN][1000 genomes]
rs6130136	0.92[CEU][hapmap]
rs6130137	0.93[CEU][hapmap]
rs6130138	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs6130141	0.83[ASN][1000 genomes]
rs62203505	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41087200-41089200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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