Variant report

Variant	rs6016803
Chromosome Location	chr20:41090512-41090513
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11697017	0.92[CEU][hapmap]
rs2076081	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs2076082	0.96[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs6016797	0.85[JPT][hapmap]
rs6016798	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs6030251	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap]
rs6030252	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs6065482	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs6072747	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs6130136	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs6130137	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41089200-41094600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41089400-41090800	Weak transcription	Right Atrium	heart
3	chr20:41090200-41090800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:41090200-41091600	Enhancers	GM12878-XiMat	blood
5	chr20:41090200-41091800	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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