Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10451716	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs11700121	0.80[CEU][hapmap]
rs12053607	0.86[CEU][hapmap]
rs1467393	0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs2076081	0.86[JPT][hapmap]
rs2076082	0.91[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3890324	1.00[ASW][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs6016796	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6016797	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6016798	0.83[JPT][hapmap]
rs6016800	0.81[CEU][hapmap]
rs6016801	0.82[ASN][1000 genomes]
rs6016803	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs6030245	0.87[ASW][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.82[ASN][1000 genomes]
rs6030251	0.93[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6030252	0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6030253	0.86[ASN][1000 genomes]
rs6030264	0.86[CEU][hapmap]
rs6065482	0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6065484	0.91[CEU][hapmap]
rs6102839	0.86[CEU][hapmap];0.85[MEX][hapmap]
rs6124458	0.91[CEU][hapmap];0.85[MEX][hapmap];0.80[EUR][1000 genomes]
rs6130133	0.86[CEU][hapmap]
rs6130134	0.86[CEU][hapmap]
rs6130136	0.89[CHD][hapmap];0.91[JPT][hapmap]
rs6130137	0.81[JPT][hapmap]
rs6130138	0.86[CEU][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6072747	ADIG	cis	parietal	SCAN
rs6072747	SPINT3	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41069600-41072400	Enhancers	Fetal Brain Male	brain
2	chr20:41069800-41072200	Enhancers	Fetal Brain Female	brain
3	chr20:41069800-41072600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:41069800-41072600	Enhancers	Fetal Muscle Leg	muscle
5	chr20:41070000-41072400	Enhancers	Adipose Nuclei	Adipose
6	chr20:41070000-41077800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr20:41070800-41072400	Enhancers	Brain Germinal Matrix	brain
8	chr20:41071600-41072200	Enhancers	Brain Cingulate Gyrus	brain
9	chr20:41072000-41073600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr20:41072000-41078200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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