Variant report

Variant	rs6016796
Chromosome Location	chr20:41071774-41071775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10451716	0.80[EUR][1000 genomes]
rs2076082	0.86[ASN][1000 genomes]
rs6016797	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6016801	0.82[ASN][1000 genomes]
rs6030245	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6030251	0.84[ASN][1000 genomes]
rs6030252	0.86[ASN][1000 genomes]
rs6030253	0.86[ASN][1000 genomes]
rs6065482	0.89[ASN][1000 genomes]
rs6072747	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6124458	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41069600-41072400	Enhancers	Fetal Brain Male	brain
2	chr20:41069800-41072200	Enhancers	Fetal Brain Female	brain
3	chr20:41069800-41072600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:41069800-41072600	Enhancers	Fetal Muscle Leg	muscle
5	chr20:41070000-41072000	Enhancers	HSMM	muscle
6	chr20:41070000-41072400	Enhancers	Adipose Nuclei	Adipose
7	chr20:41070000-41077800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr20:41070200-41071800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr20:41070200-41072000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr20:41070200-41072000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr20:41070600-41072000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr20:41070600-41072000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:41070800-41072000	Enhancers	Brain Hippocampus Middle	brain
14	chr20:41070800-41072000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr20:41070800-41072400	Enhancers	Brain Germinal Matrix	brain
16	chr20:41071600-41072000	Enhancers	Brain Angular Gyrus	brain
17	chr20:41071600-41072000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr20:41071600-41072200	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links