Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10451716	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs11700121	0.81[CEU][hapmap]
rs12053607	0.82[CEU][hapmap]
rs1467393	0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs2076081	0.91[JPT][hapmap]
rs2076082	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3890324	0.81[AFR][1000 genomes]
rs6016796	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6016798	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs6016800	0.82[CEU][hapmap]
rs6016803	0.85[JPT][hapmap]
rs6030245	0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6030251	0.91[JPT][hapmap]
rs6030252	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs6030253	0.80[ASN][1000 genomes]
rs6030264	0.86[CEU][hapmap]
rs6065482	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6065484	0.91[CEU][hapmap]
rs6072747	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6102839	0.86[CEU][hapmap]
rs6124458	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs6130133	0.86[CEU][hapmap]
rs6130134	0.87[CEU][hapmap]
rs6130136	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6130137	0.87[JPT][hapmap]
rs6130138	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41069600-41072400	Enhancers	Fetal Brain Male	brain
2	chr20:41069800-41072200	Enhancers	Fetal Brain Female	brain
3	chr20:41069800-41072600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:41069800-41072600	Enhancers	Fetal Muscle Leg	muscle
5	chr20:41070000-41072000	Enhancers	HSMM	muscle
6	chr20:41070000-41072400	Enhancers	Adipose Nuclei	Adipose
7	chr20:41070000-41077800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr20:41070200-41072000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr20:41070200-41072000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr20:41070600-41072000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:41070600-41072000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr20:41070800-41072000	Enhancers	Brain Hippocampus Middle	brain
13	chr20:41070800-41072000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr20:41070800-41072400	Enhancers	Brain Germinal Matrix	brain
15	chr20:41071600-41072000	Enhancers	Brain Angular Gyrus	brain
16	chr20:41071600-41072000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr20:41071600-41072200	Enhancers	Brain Cingulate Gyrus	brain
18	chr20:41071800-41072000	Enhancers	HSMMtube	muscle

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