Variant report

Variant	rs116980447
Chromosome Location	chr11:16206883-16206884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16206684..16208896-chr11:16625530..16628069,2	K562	blood:
2	chr11:16199096..16201886-chr11:16205151..16207192,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16197000-16207600	Weak transcription	Fetal Heart	heart
2	chr11:16205200-16207000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:16205400-16208400	Enhancers	Liver	Liver
4	chr11:16205600-16207000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:16205600-16207200	Enhancers	Fetal Intestine Large	intestine
6	chr11:16205600-16207200	Enhancers	NHLF	lung
7	chr11:16205800-16207000	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:16205800-16207000	Enhancers	NHDF-Ad	bronchial
9	chr11:16205800-16207600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:16206000-16207800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:16206200-16207000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:16206200-16207000	Enhancers	Stomach Mucosa	stomach
13	chr11:16206200-16207200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:16206200-16208400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:16206400-16207000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:16206400-16207200	Enhancers	Fetal Intestine Small	intestine
17	chr11:16206400-16207200	Enhancers	Psoas Muscle	Psoas
18	chr11:16206400-16208000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:16206600-16207000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:16206600-16212000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:16206800-16207800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr11:16206800-16208000	Enhancers	A549	lung
23	chr11:16206800-16208600	Enhancers	HepG2	liver
24	chr11:16206800-16212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:16206800-16213000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:16206800-16215800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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