Variant report

Variant	rs11698049
Chromosome Location	chr20:16093028-16093029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11696354	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11696868	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11696962	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11697461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11698180	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11698744	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11698872	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11699760	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11700056	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11700271	1.00[CHB][hapmap]
rs1323312	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17646949	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17648202	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17725752	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17727461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17728209	0.83[EUR][1000 genomes]
rs6043751	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6043752	0.94[EUR][1000 genomes]
rs991720	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1061301	chr20:16007489-16097070	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16088400-16106000	Weak transcription	Psoas Muscle	Psoas
2	chr20:16089000-16096600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr20:16090600-16093200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:16091200-16093200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr20:16091200-16094000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:16092000-16093800	Enhancers	Primary B cells from cord blood	blood
7	chr20:16092000-16094000	Enhancers	Primary B cells from peripheral blood	blood
8	chr20:16092400-16096200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr20:16092800-16093400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr20:16092800-16095800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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