Variant report
Variant | rs11696962 |
---|---|
Chromosome Location | chr20:16121995-16121996 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11696354 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs11696868 | 0.81[AMR][1000 genomes] |
rs11697461 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11698049 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11698180 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11698744 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs11698862 | 1.00[ASN][1000 genomes] |
rs11698872 | 0.81[AMR][1000 genomes] |
rs11699760 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs11700056 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs1323312 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16997277 | 0.89[ASN][1000 genomes] |
rs17646949 | 0.81[AMR][1000 genomes] |
rs17648202 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17725752 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs17727461 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17728209 | 0.83[EUR][1000 genomes] |
rs6043751 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6043752 | 0.94[EUR][1000 genomes] |
rs991720 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1059778 | chr20:15999519-16165895 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | nsv544207 | chr20:15999519-16165895 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:16121600-16122200 | ZNF genes & repeats | Primary B cells from cord blood | blood |