Variant report
Variant | rs16997277 |
---|---|
Chromosome Location | chr20:16152468-16152469 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11696962 | 0.89[ASN][1000 genomes] |
rs11697305 | 0.91[EUR][1000 genomes] |
rs11697341 | 0.91[EUR][1000 genomes] |
rs11697461 | 0.89[ASN][1000 genomes] |
rs11698180 | 0.89[ASN][1000 genomes] |
rs11698334 | 0.91[EUR][1000 genomes] |
rs11698862 | 0.89[ASN][1000 genomes] |
rs11907241 | 1.00[JPT][hapmap] |
rs17648202 | 0.89[ASN][1000 genomes] |
rs17655074 | 0.91[EUR][1000 genomes] |
rs17655092 | 0.88[EUR][1000 genomes] |
rs17727461 | 0.89[ASN][1000 genomes] |
rs17728209 | 0.96[EUR][1000 genomes] |
rs17728269 | 0.91[EUR][1000 genomes] |
rs36085973 | 0.91[EUR][1000 genomes] |
rs4416282 | 1.00[JPT][hapmap] |
rs6111004 | 1.00[JPT][hapmap] |
rs6111005 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1059778 | chr20:15999519-16165895 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | nsv544207 | chr20:15999519-16165895 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv833930 | chr20:16134347-16302763 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:16150800-16152800 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |