Variant report

Variant	rs11699066
Chromosome Location	chr20:12693957-12693958
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11697551	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11698851	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11699509	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1413014	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1413015	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1413016	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1930801	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1930802	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1930803	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2225616	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2327470	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4814150	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4814151	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4814152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4814153	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4814154	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4814156	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4814157	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4814158	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55736599	0.90[EUR][1000 genomes]
rs56092613	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56137994	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56146900	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56664126	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57481915	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57834973	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58903264	0.90[EUR][1000 genomes]
rs59036896	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59645310	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73897890	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73897891	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73897893	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73897899	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73897900	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs869209	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs869210	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs950432	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058919	chr20:11917331-12733316	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544183	chr20:11917331-12733316	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv18943	chr20:12627634-12841804	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:12691800-12703000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:12693400-12697200	Enhancers	HMEC	breast
3	chr20:12693600-12697200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:12693800-12696600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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