Variant report
| Variant | rs950432 |
|---|---|
| Chromosome Location | chr20:12717617-12717618 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs11697551 | 0.80[EUR][1000 genomes] |
| rs11698851 | 0.80[EUR][1000 genomes] |
| rs11699066 | 0.80[EUR][1000 genomes] |
| rs11699509 | 0.80[EUR][1000 genomes] |
| rs1413014 | 0.80[EUR][1000 genomes] |
| rs1413015 | 0.80[EUR][1000 genomes] |
| rs1413016 | 0.80[EUR][1000 genomes] |
| rs1930801 | 0.80[EUR][1000 genomes] |
| rs1930802 | 0.80[EUR][1000 genomes] |
| rs1930803 | 0.80[EUR][1000 genomes] |
| rs2225616 | 0.80[EUR][1000 genomes] |
| rs2327470 | 0.85[EUR][1000 genomes] |
| rs4814150 | 0.80[EUR][1000 genomes] |
| rs4814151 | 0.80[EUR][1000 genomes] |
| rs4814152 | 0.80[EUR][1000 genomes] |
| rs4814153 | 0.80[EUR][1000 genomes] |
| rs4814154 | 0.80[EUR][1000 genomes] |
| rs4814156 | 0.83[EUR][1000 genomes] |
| rs4814157 | 0.83[EUR][1000 genomes] |
| rs4814158 | 0.83[EUR][1000 genomes] |
| rs55736599 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs56092613 | 0.83[EUR][1000 genomes] |
| rs56137994 | 0.83[EUR][1000 genomes] |
| rs56146900 | 0.80[EUR][1000 genomes] |
| rs56664126 | 0.80[EUR][1000 genomes] |
| rs57481915 | 0.80[EUR][1000 genomes] |
| rs57834973 | 0.80[EUR][1000 genomes] |
| rs58903264 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs59036896 | 0.80[EUR][1000 genomes] |
| rs59645310 | 0.80[EUR][1000 genomes] |
| rs59822362 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73897890 | 0.80[EUR][1000 genomes] |
| rs73897891 | 0.80[EUR][1000 genomes] |
| rs73897893 | 0.80[EUR][1000 genomes] |
| rs73897899 | 0.82[EUR][1000 genomes] |
| rs73897900 | 0.83[EUR][1000 genomes] |
| rs73900217 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs869209 | 0.82[EUR][1000 genomes] |
| rs869210 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1058919 | chr20:11917331-12733316 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv544183 | chr20:11917331-12733316 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv18943 | chr20:12627634-12841804 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | esv2763218 | chr20:12717131-12728818 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:12703200-12724200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 2 | chr20:12717200-12718200 | Weak transcription | Placenta | Placenta |
| 3 | chr20:12717400-12718000 | Enhancers | HUES6 Cell Line | embryonic stem cell |
| 4 | chr20:12717400-12719400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
