Variant report

Variant	rs1170024
Chromosome Location	chr14:38415168-38415169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10134624	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140719	0.95[EUR][1000 genomes]
rs10145337	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10146385	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10872905	0.81[EUR][1000 genomes]
rs11156974	0.83[EUR][1000 genomes]
rs11621735	0.83[EUR][1000 genomes]
rs11622986	0.90[EUR][1000 genomes]
rs1170025	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1170028	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1170029	0.98[EUR][1000 genomes]
rs1170030	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1170031	0.83[EUR][1000 genomes]
rs17107343	0.90[EUR][1000 genomes]
rs17179919	0.84[EUR][1000 genomes]
rs17554993	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1952787	0.83[EUR][1000 genomes]
rs1958693	0.80[EUR][1000 genomes]
rs2150322	0.91[EUR][1000 genomes]
rs2183531	0.91[EUR][1000 genomes]
rs35272292	0.81[EUR][1000 genomes]
rs4143919	0.80[EUR][1000 genomes]
rs4597229	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4901412	0.81[EUR][1000 genomes]
rs4901413	0.80[EUR][1000 genomes]
rs71407745	0.83[EUR][1000 genomes]
rs7148370	0.94[EUR][1000 genomes]
rs7153182	0.93[EUR][1000 genomes]
rs7158383	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8013747	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8014896	0.89[EUR][1000 genomes]
rs8020796	0.84[EUR][1000 genomes]
rs954881	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38414600-38415600	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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