Variant report

Variant	rs11701869
Chromosome Location	chr21:41008431-41008432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:40996081..40997665-chr21:41007719..41010379,2	MCF-7	breast:
2	chr21:41008366..41010301-chr21:41014021..41016032,2	MCF-7	breast:
3	chr21:40684766..40687078-chr21:41006043..41008701,2	MCF-7	breast:
4	chr21:41000981..41003548-chr21:41005728..41009282,3	MCF-7	breast:
5	chr21:41004133..41006069-chr21:41006515..41009780,3	K562	blood:
6	chr21:41006829..41008566-chr21:41050503..41052458,2	K562	blood:
7	chr21:41002066..41004417-chr21:41008308..41010539,2	MCF-7	breast:
8	chr21:41006012..41008630-chr21:41106556..41108420,2	MCF-7	breast:
9	chr21:41005974..41008004-chr21:41008331..41010017,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185658	Chromatin interaction
ENSG00000255568	Chromatin interaction
ENSG00000225330	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11088488	0.87[AMR][1000 genomes]
rs11088489	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73213473	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059868	chr21:40711535-41043291	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv459260	chr21:41000353-41028197	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv587485	chr21:41000353-41028197	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40995800-41009000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:40998200-41014800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr21:41002800-41013800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr21:41005000-41012000	Weak transcription	Small Intestine	intestine
5	chr21:41006600-41013000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr21:41006800-41008800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr21:41006800-41009600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr21:41006800-41010600	Weak transcription	Osteobl	bone
9	chr21:41007000-41009200	Weak transcription	A549	lung
10	chr21:41007000-41009800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr21:41007200-41010600	Weak transcription	NH-A	brain
12	chr21:41007400-41008800	Enhancers	Duodenum Mucosa	Duodenum
13	chr21:41007600-41008800	Enhancers	HSMMtube	muscle
14	chr21:41007800-41008600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr21:41007800-41009600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr21:41007800-41010600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr21:41007800-41011000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr21:41007800-41011200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr21:41007800-41017400	Enhancers	Fetal Intestine Small	intestine
20	chr21:41008000-41009200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr21:41008000-41009600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr21:41008000-41010200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr21:41008000-41011000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr21:41008200-41008600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr21:41008200-41008800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr21:41008200-41011000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr21:41008200-41011000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr21:41008200-41011200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr21:41008200-41012800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr21:41008200-41017200	Enhancers	Fetal Intestine Large	intestine
31	chr21:41008200-41017400	Enhancers	Stomach Mucosa	stomach
32	chr21:41008400-41008800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr21:41008400-41008800	Bivalent Enhancer	Colonic Mucosa	Colon
34	chr21:41008400-41009000	Weak transcription	HSMM	muscle
35	chr21:41008400-41009400	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr21:41008400-41009800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr21:41008400-41010200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr21:41008400-41011000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr21:41008400-41011000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr21:41008400-41011000	Enhancers	Pancreas	Pancrea

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