Variant report
Variant | rs11706025 |
---|---|
Chromosome Location | chr3:143762420-143762421 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10513239 | 1.00[YRI][hapmap];0.91[AMR][1000 genomes] |
rs11719625 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11917772 | 0.93[GIH][hapmap];0.90[MEX][hapmap] |
rs12107761 | 0.94[EUR][1000 genomes] |
rs13314252 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13320111 | 0.93[GIH][hapmap];1.00[MEX][hapmap] |
rs16854874 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16854922 | 1.00[YRI][hapmap];0.94[EUR][1000 genomes] |
rs2196520 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28575778 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73002695 | 0.95[AMR][1000 genomes] |
rs73002698 | 0.95[AMR][1000 genomes] |
rs73006421 | 0.89[EUR][1000 genomes] |
rs7627966 | 0.95[AMR][1000 genomes] |
rs9809059 | 0.94[EUR][1000 genomes] |
rs9809103 | 0.94[EUR][1000 genomes] |
rs9825324 | 0.94[EUR][1000 genomes] |
rs9835993 | 0.90[GIH][hapmap];1.00[MEX][hapmap] |
rs9847681 | 0.93[GIH][hapmap] |
rs9850346 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9861563 | 0.95[AMR][1000 genomes] |
rs9862771 | 0.84[ASN][1000 genomes] |
rs9868658 | 0.94[EUR][1000 genomes] |
rs9868954 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9869858 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9879081 | 0.93[GIH][hapmap];1.00[MEX][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv877568 | chr3:143621140-143992630 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
2 | esv3365190 | chr3:143642195-143925886 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
3 | nsv591922 | chr3:143645242-143825439 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
4 | nsv1010117 | chr3:143750590-144093775 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv536748 | chr3:143750590-144093775 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv877569 | chr3:143762420-143825439 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:143758800-143764000 | Weak transcription | Muscle Satellite Cultured Cells | -- |